Cell Bank Overview

Cells Needed

HLA Gene Submission Form


Services/Resources Provided


The Cell and Gene Bank will provide DNA from standardized reference B-LCL for use as positive and negative controls for workshop projects using SSOP and SBT typing systems, those studying single nucleotide polymorphism and microsatellite markers, and those studying minor histocompatibility antigens. The Cell Bank will also distribute selected reagents (e.g., CEPH family cells, cells expressing null alleles, SNP typing kits) to participants in specific workshop components. Additional support activity provided by the Cell and Gene Bank will be defined by Component Chairs and their working groups as workshop protocols and procedures are developed.

The first two tables below show the current reference panels that have been assembled for use in SSOP and SBT typing assays developed by the SSOP and SBT Typing Technology Core. DNA from these reference cells is distributed to participating laboratories for use as positive and negative controls to monitor the specificity of primers and probes. The third table shows the current inventory of cloned HLA class I genes in the IHWG Gene Bank. The fourth table shows the current inventory of HLA-transduced cell lines in the 13th IHWG Cell Bank. These HLA transfectants have been generated for the isolation and study of mHA specific CTL clones.





        IHWG SSOP Reference Cell Panel
        High Resolution HLA-A, B, C
        Medium Resolution DRB

-- HLA Alleles
Ref. Cell No. WS No. Designation HLA-A HLA-B HLA-C HLA-DRB1
1 9215 M7 0202;0301 3501;5301 0401 03011;0701
2 9273 LADA 0201;8001 0702;5703 0701;0802 09012;1201
3 9263 G085 0101;2901 4006;5201 12022;1502 1404;15021
4 9373 FH1 0205;6802 1402;5801 0701;0802 1302;0102
5 9030 JHAF 31012 51011 1502 0407
6 9035 JBush 3201 3801 1203 1101
7 9045 TUBO 0216;0301 51011 0704;1502 1201;1104
8 9220 XLI-ND 0210;3001 1302;4006 0602;0801;08 0701;09012
9 9077 T7527 0207 4601 0102 0901;12
10 9085 EJ32B 3002 1801 0501 03011
11 9103 KT14 2402;2602 4006;51011 0801;1402 09012
12 9374 FH2 3401;0201 4001;4402 0501;0304 1302;1301
13 9375 FH3 3301;3101 1402;3502 0401;0802 1101;1104
14 9364 GRC212 0211;68012 3505;4004 03041;04011 0411;09012
15 9371 ISH4 0218;1101 1501;4601 04011;0102 04;08
16 9368 280599 2604;2402 3901;3802 0702/3;0702/3 0901;1501
17 9367 LCK 0203;1102 38021;4601 0702;1202 0901
18 9394 BPOT 0201 0703;15xx 03031 1301;15011
19 9395 202002 NK 0805 NK NK
20 9048 LBUF 3001 1302 0602 07011
21 9032 BSM 0201 1501 0304 0401
22 9237 APA 1101;2403 1502;5502 0801;1203 15011;1405
23 9253 THAI742 2403;3303 1512;4601 0102;03031 0406;12021
24 9369 ISH3 2402 1526N 04011 0406
25 9380 FH6 2402;2901 2702;0705/6 02022;1505 1001;1601
26 9376 FH4 0101 2703;2705 02022 7;11
27 9266 PAR 11011;2402 2706;4801 03041;0801 15021;11011
28 9377 FH5 2902;0201 2709;4403 0102;1601 1401;07
29 9068 BM9 0201 3501 0401 0801
30 9056 KOSE 0201 3503 1203 1302;1401
31 9009 KAS011 0101 3701 0602 1601
32 9381 FH7 0206;3002 3908;1801 0702;0501 0315;04071
33 9385 FH11 0301;2902 4404;07021 0702;1601 0101;1101
34 9047 PLH 0301 4701 0602 0701
35 9392 GN00218 0301;2902 4703 0602;07011;12 NK
36 9040 BM15 0101 4901 0701 1102
37 9092 BM92 2501 51011 0102 0404
38 9370 230699 0206;2402 5103;07021 0702;1402 0101;0405
39 9372 ISH5 2402 5401;4801 0803;0102 0901;1405
40 9052 DBB 0201 5701 0602 0701
41 9267 LE023 6601;3201 7301;51011 0102;15051 1301;1302
42 9382 FH8 11011;3402 8201;2705227 0302;0102 07,1503
43 9366 Daudi 0102;6601 5801;5802 0302;0602 1301;1302
44 9014 MGAR 2601 0801 0701 1501
45 9053 HOR 3303 44031 1403 1302
46 9021 RSH 3001;6802 4201 1701 03021
47 9024 KT17 0201;1101 15011;3501 0303;0401 0406
48 9016 RML 0204 51011 1502 1602
49 9297 HAG 02011 4102 1701 1303
50 9386 FH12 0225;1101 4402;27052 0501;02022 1201;0404
51 9387 FH13 3402;6802 44031;1510 0401;03042 1503;0301
52 9398 FH18 7401;3601 5301;5703 0401;0701 0804;1303

  NK= Typing currently not known.

Alleles shown in bold colors are those with sequence polymorphisms corresponding to one or more probes for that locus. Note that a given HLA-A, B, C or DRB1 allele may be expressed by more than one cell in the panel (e.g., the A*0201 allele occurs at least seven times in the panel). Alleles colored red represent a suggested reference cell panel that would provide the maximum number of positive hybridizations for probes at each locus. Alleles colored blue represent duplicate examples of alleles colored red.

Missing essential alleles:
    A*0221, 7403, 2606, 1103, 2408; 0304
    B*1404, 1528, 1533, 1805; 3507, 3912, 4015, 5505
    Cw*0703, 0705, 0502, 0405, 0306, 1206, 0305




 
       IHWG SBT Reference Cell Panel
     High Resolution HLA-A, B, DRB1


  HLA Allelesa  
  Ref. Cell # Workshop # Designation HLA-A HLA-B HLA-DRB1  
               
  1 9215 M7   3501;5301    
  2 9273 LADA 0201;8001 0702;5703    
  3 9263 G085 0101;2901      
  4 9373 FH1 0205;6802      
  6 9035 JBush   3801    
  7 9045 TUBO 0216;0301   1201;1104  
  8 9220 XLI-ND     07;09  
  9 9076 T7526 0206;0207      
  11 9103 KT14 2402;2602      
  12 9374 FH2   4001;4402 1301;1302  
  13 9375 FH3     1101;1104  
  14 9364 GRC212 0211;68012 3505;4004    
  16 9368 280599 2604;2402   0901;1501  
  17 9367 LCK 0203;1102 38021;4601    
  23 9253 THAI742 2403;3303 1512;4601    
  24 9369 ISH3   1526N    
  25 9380 FH6   2702;07 1001;1601  
  26 9376 FH4   2703;2705    
  30 9056 KOSE     1302;1401  
  32 9381 FH7   3908;1801 0315;04071  
  37 9092 BM92 2501      
  38 9370 230699     0101;0405  
  41 9267 LE023 6601;3201 7301;5101    
  42 9382 FH8   8201;27052    
  46 9021 RSH 3001;6802      
  47 9024 KT17   15011;3501
 
  48 9016 RML   5101    
  61 9388 FH14     0401;0404  
  62 9397 DUG150     0803;1201  
  63 9389 FH15     0301;1103  
  64 9390 FH16     0301;1401  
  65 9391 FH17     1101;1301  
a HLA alleles (expressed by each reference cell) that contain critical sequence polymorphisms at selected positions in the A, B or DRB1 gene.

For a complete listing of the A, B, C, DRB1 alleles of each cell, see the SSOP reference panel (above).




  Cloned HLA genes in the 13th IHWG Gene Bank
  
  HLA Gene Type of Clone Plasmid Vector  
  A*0101 cDNA pcDNA3.1a  
  A*0201 cDNA pCR2.1b; pLNCXa; pcDNA3.1  
  A*2402 cDNA pCR2.1; pLNCX; pcDNA3.1  
  A*0301 cDNA pCR2.1; pLNCX  
  A*31012 cDNA pGEM-Tb; pLNCX  
  A*6901 cDNA pCR2.1; pLNCX  
  B*0702 cDNA pCR2.1; pLNCX  
  B*0801 cDNA pending  
  B*1501 cDNA pCR2.1  
  B*27052 cDNA pLNCX  
  B*3501 cDNA pCR2.1; pLNCX  
  B*3901 cDNA pCR2.1; pLNCX  
  B*4402 cDNA pCR2.1; pLNCX  
  B*4701 cDNA pCR2.1; pLNCX  
  B*4901 cDNA pCR2.1; pLNCX  
  B*5101 cDNA pCR2.1; pLNCX  
  B*5501 cDNA pCR2.1; pLNCX  
  C*0401 cDNA pLNCX  
  C*1402 cDNA pLNCX  
  C*1502 cDNA pLNCX  
     aMammalian expression vector
     bCloning vector

Reference Panels for Sequencing Based Typing:
Selection Criteria for HLA-A and HLA-B (Erik Rozemuller) - pdf download


     HLA-transduced cell lines in the 13th IHWG Cell Bank

IHW# Transfectant Name Original Designation Transfected gene Antibiotic resistance
IHW03001 AMALA-A*24 AMALA A*24 puromycin
IHW03002 BM15-A*24 BM15 A*24 puromycin
IHW03003 BM21-A*24 BM21 A*24 puromycin
IHW03004 BSM_A*24 BSM A*24 puromycin
IHW03005 BTB_A*24 BTB A*24 puromycin
IHW03006 HOM2_A*24 HOM2 A*24 puromycin
IHW03007 KAS001_A*24 KAS001 A*24 puromycin
IHW03008 KOSE_A*24 KOSE A*24 puromycin
IHW03009 LWAGS_A*24 LWAGS A*24 puromycin
IHW03010 LZL_A*24 LZL A*24 puromycin
IHW03011 PF4015_A*24 PF4015 A*24 puromycin
IHW03012 STEINLIN_A*24 STEINLIN A*24 puromycin
IHW03013 VAVY_A*24 VAVY A*24 puromycin
IHW03014 BM15_A*2 BM15 A*2 puromycin
IHW03015 BM21_A*2 BM21 A*2 puromycin
IHW03016 HOM2_A*2 HOM2 A*2 puromycin
IHW03017 KAS116_A*2 KAS116 A*2 puromycin
IHW03018 LO541265_A*2 LO541265 A*2 puromycin
IHW03019 LWAGS_A*2 LWAGS A*2 puromycin
IHW03020 PF4015_A*2 PF4015 A*2 puromycin
IHW03021 STEINLIN_A*2 STEINLIN A*2 puromycin
IHW03022 VAVY_A*2 VAVY A*2 puromycin
IHW03023 WT47_A*2 WT47 A*2 puromycin
IHW03024 WT51_A*2 WT51 A*2 puromycin
IHW03025 YAR_A*2 YAR A*2 puromycin
IHW03026 AMALA_A*3303 AMALA A*3303 puromycin
IHW03027 BM15_A*3303 BM15 A*3303 puromycin
IHW03028 BM21_A*3303 BM21 A*3303 puromycin
IHW03029 BOLETH_A*3303 BOLETH A*3303 puromycin
IHW03030 BSM_A*3303 BSM A*3303 puromycin
IHW03031 BTB_A*3303 BTB A*3303 puromycin
IHW03032 HOM2_A*3303 HOM2 A*3303 puromycin
IHW03033 KAS001_A*3303 KAS001 A*3303 puromycin
IHW03034 LO541265_A*3303 LO541265 A*3303 puromycin
IHW03035 LWAGS_A*3303 LWAGS A*3303 puromycin
IHW03036 LZL_A*3303 LZL A*3303 puromycin
IHW03037 PF4015_A*3303 PF4015 A*3303 puromycin
IHW03038 AMALA_B*4403 AMALA B*4403 puromycin
IHW03039 BM15_B*4403 BM15 B*4403 puromycin
IHW03040 BM21_B*4403 BM21 B*4403 puromycin
IHW03041 BOLETH_B*4403 BOLETH B*4403 puromycin
IHW03042 BSM_B*4403 BSM B*4403 puromycin
IHW03043 BTB_B*4403 BTB B*4403 puromycin
IHW03044 HOM2_B*4403 HOM2 B*4403 puromycin
IHW03045 KAS001_B*4403 KAS001 B*4403 puromycin
IHW03046 LO541265_B*4403 LO541265 B*4403 puromycin
IHW03047 LWAGS_B*4403 LWAGS B*4403 puromycin
IHW03048 LZL_B*4403 LZL B*4403 puromycin
IHW03049 PF4015 _B*4403 PF4015 B*4403 puromycin
IHW03050 AMALA_B*5201 AMALA B*5201 puromycin
IHW03051 BM15_B*5201 BM15 B*5201 puromycin
IHW03052 BM21_B*5201 BM21 B*5201 puromycin
IHW03053 BOLETH_B*5201 BOLETH B*5201 puromycin
IHW03054 BSM_B*5201 BSM B*5201 puromycin
IHW03055 BTB_B*5201 BTB B*5201 puromycin
IHW03056 HOM2_B*5201 HOM2 B*5201 puromycin
IHW03057 KAS001_B*5201 KAS001 B*5201 puromycin
IHW03058 LO541265_B*5201 LO541265 B*5201 puromycin
IHW03059 LWAGS_B*5201 LWAGS B*5201 puromycin
IHW03060 LZL_B*5201 LZL B*5201 puromycin
IHW03061 PF4015_B*5201 PF4015 B*5201 puromycin
IHW03062 AMALA_C*1403 AMALA C*1403 puromycin
IHW03063 BM15_C*1403 BM15 C*1403 puromycin
IHW03064 BM21_C*1403 BM21 C*1403 puromycin
IHW03065 BOLETH_C*1403 BOLETH C*1403 puromycin
IHW03066 BSM_C*1403 BSM C*1403 puromycin
IHW03067 BTB_C*1403 BTB C*1403 puromycin
IHW03068 HOM2_C*1403 HOM2 C*1403 puromycin
IHW03069 KAS001_C*1403 KAS001 C*1403 puromycin
IHW03070 LO541265_C*1403 LO541265 C*1403 puromycin
IHW03071 LWAGS_C*1403 LWAGS C*1403 puromycin
IHW03072 LZL_C*1403 LZL C*1403 puromycin
IHW03073 PF4015_C*1403 PF4015 C*1403 puromycin
IHW03074 AMALA_C*12 AMALA C*12 puromycin
IHW03075 BM15_C*12 BM15 C*12 puromycin
IHW03076 BM21_C*12 BM21 C*12 puromycin
IHW03077 BOLETH_C*12 BOLETH C*12 puromycin
IHW03078 BSM_C*12 BSM C*12 puromycin
IHW03079 BTB_C*12 BTB C*12 puromycin
IHW03080 HOM2_C*12 HOM2 C*12 puromycin
IHW03081 KAS001_C*12 KAS001 C*12 puromycin
IHW03082 LO541265_C*12 LO541265 C*12 puromycin
IHW03083 LWAHS_C*12 LWAHS C*12 puromycin
IHW03084 LZL_C*12 LZL C*12 puromycin
IHW03085 PF401265_C*12 PF401265 C*12 puromycin
IHW03086 .221_A*1101 .221 A*1101 puromycin
IHW03087 .221_A*24 .221 A*24 puromycin
IHW03088 .221_A*0201 .221 A*0201 puromycin
IHW03089 .221_A*2603 .221 A*2603 puromycin
IHW03090 .221_A*3303 .221 A*3303 puromycin
IHW03091 .221_B*4403 .221 B*4403 puromycin
IHW03092 .221_B*5201 .221 B*5201 puromycin
IHW03093 .221_C*1202 .221 C*1202 puromycin
IHW03094 .221_C*1403 .221 C*1403 puromycin
IHW03095 .221_B*51 .221 B*51 G418
IHW03096 .221_C*0401 .221 C*0401 G418
IHW03097 .221_B*51C*0401 .221 B*51 & C*0401 G418


updated January 30, 2002



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