13th IHWC HLA and Mycobacterial Disease study
General Work Plan Sheet
(i) 10 ml (EDTA) blood for DNA isolation for HLA class II analysis.
(ii) 10 ml (heparinised) blood for cell surface and intracellular cytokine staining
(iii) 5 ml for serum. The serum must be stored at 70° C.
Class II
: The standard procedures including PCR-SSP are recommended for HLA class II typings. We would encourage SSOP, RBH (and SBT technologies, if possible) for high resolution subtyping of DRB1-DRB5 and DQB1 genes.You are advised to fix and freeze the lymphocytes as per the protocol. The frozen cells can be shipped in dry ice and DNA at room temperature to the New Delhi laboratory for flowcytometric and NRAMP analysis.
For further details contact:
PROF NARINDER MEHRA
Chair, Mycobacterial Disease Study
DEPARTMENT OF HISTOCOMPATIBILITY & IMMUNOGENETICS
ALL INDIA INSTITUTE OF MEDICAL SCIENCES
ANSARI NAGAR
NEW DELHI-110029
INDIA
TEL: (91 11) 6967588 (O) , 6859185 (R)
FAX: (91 11) 6862663
EMAIL: narin98@hotmail.com
nkmehra@medinst.ernet.in
Annexure I
Isolation, fixing and freezing of lymphocytes for intracellular cytoplasmic staining
Preparation of reagents:
PBS: 1.9mM Na H2PO4, 8.1 mM Na2HPO4, 0.154 M NaCl. Set pH 7.2 -7.4 with 1M NaOH or 1M Hcl.
PMA: (2ng/ ml) Dissolve 10 mg in 500 m l DMSO and store the stock in aliquots at -20° C. Without repeated freezing or thawing, dilute 5 m l (100m g) of the stock with 95 m l PBS and store at -20° C. Dilute 1 m l of this stock with 999m l of RPMI plus 10 % FCS and use 2m l / ml culture to obtain 2 ng/ml final concentration.
Ionomycin: (2 m M) Prepare 5 mg/ml stock in DMSO (10mM). Dilute 200m l with 800 m l PBS (2mM) and use 1m l in 1 ml culture to obtain 2m M final concentration.
Monensin: (2 m M) Dissolve Monensin in absolute alcohol as a stock of 2mM and add NaOH to final 1 mM concentration. Use 1m l in 1 ml culture to obtain 2m M final concentration.
PBS+BSA+Azide buffer: Mix 500 ml PBS + 0.5 ml 1M Sodium azide in water + 2.5 gm BSA (Fraction V). Dissolve and filter sterilize. Store at 4° C
Freezing mixture: 10 % DMSO in 1% BSA (prepared in PBS).
4 % formaldehyde: Take 10.8 ml of 37.5 % formaldehyde from the bottle and make up the vol to 100 ml with PBS. Filter and store at 4° C.
Procedure: