| Questionnaire, word format or PFD format Update, Dec, 1999 Participants Type 1 Diabetes Genetics Consortium MAIL TO: IDDM Component
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Insulin
Dependent Diabetes Mellitus
INTRODUCTION The primary aim of the HLA and Disease Component of the 13th IHWC as well of the IDDM Component is to identify additional genes within the HLA complex (other than those already known) with effects on disease susceptibility and resistance. This should be an excellent opportunity to foster collaboration and gain new insight into HLA-encoded predisposition to IDDM.
SUBJECTS AND METHODS As in previous editions of the IHWC, families and case-control pairs will be studied through the collaborative participation of several laboratories throughout the world. The participation of those laboratories previously involved in the IHWC is strongly encouraged, as well as the participation of new laboratories. Those interested in participating should carefully fill out the IDDM-IHWC questionnaire (see below) and send it to the IDDM Component organizers (see below). As of September 1999, 35 laboratories worldwide have accepted to participate in the study. Please see the table for details. A total of 5,778 patients and 3,353 controls, HLA-typed with typing reagents developed during previous HLA Workshops (11th and 12th) are already available for the study. According to the information provided by the participating laboratories, more than 2,000 patients and 2,000 controls may become available in the next future as HLA typing is completed on additional patients. Moreover, more patients and controls may be recruited during the course of the study. We have also identified 512 families with at least one parent homozygous for class II DR/DQ alleles for studies involving TDT analysis as described in methods. We are very pleased that many investigators worldwide have accepted to participate in the study, showing to share our enthusiasm for collaborating in our common quest to solve the diabetes problem. Additional groups are welcome to join the study during the next few months. It is planned to close recruitment by February 2,000. A common protocol and reagents for HLA class I, microsatellite typing, and SNP typing will be distributed to all participants at no cost. It is planned to complete a first-step microsatellite analysis by the end of 1999. Further analysis in regions of interest identified in the first step will be performed using additional markers, including microsatellites and SNPs (Single Nucleotide Polymorphisms, simply detectable with conventional PCR and agarose gel electrophoresis). Because a number of participants may not have adequate facilities for microsatellite typing, we have identified a government-subsidized, non-profit typing facility serving as the 13th IHWC Central Laboratory for microsatellite typing. This facility is the National Center for Genotyping (CNG) in Paris, France, directed by Dr. Mark Lathrop. Microsatellite typing will be free to participants since its cost will be covered by a grant we have recently applied for. Of course DNA samples will have to be shipped to the CNG, and precise instructions for shipping and coding samples will be distributed shortly to all participants. Please note that DNA samples will only be used for studies described in the aims of the 13th IHWC. IMPORTANT REQUIREMENTS
Data generated by individual laboratories or through the 13th IHWC Central Laboratory will be collected into a database. Data will be analyzed using a interactive, user-friendly, web-based software that can be accessed through the internet by all participants. Dr. Glenys Thomson will be responsible for the design of this program and for the overall analysis. However, the participation of individual laboratories to the data analysis of their own data set is expected and encouraged. IDDM_13IHWC@yahoo.com |
| Sophie Caillat-Zucman Laboratoire d"Immunologie et INSERM U25 Hopital Necker 161 Rue de Sevres 75014 Paris, France 33-44-49-53-74 (phone) 33-44-49-52-21 (fax) caillat@ceylan.necker.fr |
Alberto Pugliese Diabetes Research Institute University of Miami 1450 NW 10th Avenue Miami, FL 33136- USA 1-305-243-4404 (phone) 1-305-243-5348 (fax) apuglies@med.miami.edu |